Summary of Saccharomyces cerevisiae S288c, version 28.0
Tier 1 Highly Curated Database

Database Authors: J. Michael Cherry1, Benjamin Vincent1, Rama Balakrishnan1, Julie Park1, Eurie Hong1, Cynthia Krieger1, Ron Caspi2, Hartmut Foerster3

1Saccharomyces Genome Database, 2SRI International, 3Boyce Thompson Institute for Plant Research

Summary:
YeastCyc is a Pathway/Genome Database of the model eukaryote Saccharomyces cerevisiae. The sequence information was obtained from the reference genome for the strain Saccharomyces cerevisiae S288c. In addition to genomic information, the database contains metabolic pathway, reaction, enzyme, and compound information, which has been manually curated from the scientific literature.

The database was generated in 2002 by the SGD project using SRI International's Pathway Tools software, and benefited from significant curation by SGD (SGD curation was funded by grant HG001315 from the National Human Genome Research Institute of the US National Institutes of Health). In 2012 the database was transferred to SRI International, where it is curated by curators from the SRI Bioinformatics Research Group, and from the Boyce Thompson Institute. That curation process includes periodic updates to the metabolites, reactions, and pathways from the current version of MetaCyc to ensure compatibility with other members of the MetaCyc family of databases. YeastCyc has been curated from 1,800 publications.

Taxonomic Lineage: cellular organisms, Eukaryota, Opisthokonta, Fungi, Dikarya, Ascomycota, saccharomyceta, Saccharomycotina, Saccharomycetes, Saccharomycetales, Saccharomycetaceae, Saccharomyces, Saccharomyces cerevisiae, Saccharomyces cerevisiae S288c

Synonyms: Saccharomyces cerevisiae S288c, ATCC 18824 , CBS 1171, CBS 1171 , Candida robusta, NRRL Y-12632, NRRL Y-12632 , Saccaromyces cerevisiae, Saccharomyces capensis, Saccharomyces italicus, Saccharomyces oviformis, Saccharomyces uvarum var. melibiosus, Saccharomyes cerevisiae, Sccharomyces cerevisiae, bakers yeast, brewers yeast, lager beer yeast, yeast

Unification Links: GOLD:0076025, NCBI-Taxonomy:559292

RepliconTotal GenesProtein GenesRNA GenesPseudogenesSize (bp)NCBI Link
Chromosome 47847523201,531,933
Chromosome 155745433101,091,291
Chromosome 75765304601,090,940
Chromosome 125645105401,078,177
Chromosome 16494471230948,066
Chromosome 13498462360924,431
Chromosome 2430413170813,184
Chromosome 14414394200784,333
Chromosome 10387357300745,751
Chromosome 11339318210666,816
Chromosome 5315286290576,874
Chromosome 8302287150562,643
Chromosome 9226213130439,888
Chromosome 3181167140316,620
Chromosome 6140126140270,161
Chromosome 11009460230,218
Mitochondrial Chromosome461927085,779
Total:6,3705,942428012,157,105
Ortholog data available?Yes

Genes:6,374
Pathways:343
Enzymatic Reactions:1,649
Transport Reactions:199
Polypeptides:5,955
Protein Complexes:749
Enzymes:1,370
Transporters:348
Compounds:1,169
tRNAs:299
Growth Media:1
Protein Features:7,782
GO Terms:216,042
Gene Essentiality Datasets:1

Genetic Code Number:
1 -- Standard

Organelle Genetic Code:
3 -- Yeast Mitochondrial

PGDB Unique ID: 3O

Copyright 1997-2013 The Board of Trustees of Leland Stanford Junior University, 2014-2023 SRI International. Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.

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